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The heat break fan and motherboard fan are connected in parallel. They will automatically start rotating when the nozzle temperature reaches 50°C and will automatically turn off when the nozzle temperature drops below 50°C. They cannot be manually turned on or off.
After the first layer is printed, the part cooling fan will start rotating.
This fan can be turned on or off via Touchscreen → Settings → Fan Control, or through Fluidd.
The auxiliary fan is connected in parallel with the part cooling fan. There is a physical switch button on the top side of the auxiliary fan, which can be used to turn it on or off.
It automatically starts rotating when the power supply is turned on and cannot be manually controlled.
Please refer to the instructions below for further troubleshooting:
https://wiki.elegoo.com/en/neptune/heat-break-cooling-fan-cannot-work
a. Turn off the power switch and unplug the power cord
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b. Ensure the ribbon cable is properly seated in the bracket, check for bent pins, and re-plug the ribbon cable connector
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a. Turn off the printer power switch and unplug the power cord
b. Unplug the auxiliary fan connector
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d. Remove the four screws securing the auxiliary fan and take it off
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e. Remove the three screws securing the back of the extruder
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f. Remove the two screws securing the front side of the extruder. Do not unplug the extruder ribbon cable
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When removing the last screw, support the extruder with your hand to prevent it from falling
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g. Swap the part cooling fan and heat break fan connectors

h. Turn on the printer power switch and set the nozzle temperature to 200°C. Wait until the nozzle temperature reaches 50°C, then check whether the part cooling fan spins normally
a. Confirm that the auxiliary fan button is switched to ON
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b. Turn off the power switch and unplug the power cord
c. Check whether the auxiliary fan connector is damaged, and re-plug the auxiliary fan connector
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d. Plug in the power cord and turn on the printer power switch
e. Turn on the part cooling fan via the touchscreen and check whether the part cooling fan spins
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a. Set the nozzle temperature to 200°C via the touchscreen
b. Wait until the nozzle temperature reaches above 50°C, then check whether the heat break fan spins
It is not recommended to disassemble the power supply for inspection. It is recommended to replace the power supply directly.